PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03488g02009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 480aa    MW: 53330 Da    PI: 5.4662
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03488g02009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.84.7e-35221122101
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl k+ye+++d+++++++sw+ +g+sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF++++F
  Niben101Scf03488g02009.1  22 FLLKTYEMVDDSQTDDIVSWTPTGHSFVVWNPPEFARILLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEF 97 
                               9****************************************************************999.........******** PP

                               XXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkk 101
                                k++k+ll++i+r+k
  Niben101Scf03488g02009.1  98 VKDQKHLLKNIHRRK 112
                               *************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-3818111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.2E-6118111IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.4E-3618111IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.1E-202245IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3122111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-206072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-207385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MDVISATASS AAAGGGGGPA PFLLKTYEMV DDSQTDDIVS WTPTGHSFVV WNPPEFARIL  60
LPTYFKHNNF SSFIRQLNTY GFRKIDPERW EFANEEFVKD QKHLLKNIHR RKPIHSHSHP  120
PGSTVDPERA AFEEEIDKLS REKSGLEANV LRFRQQQSAA KLQLEEMTER VGGIEQRQES  180
LLTFVEKAVL NPDFVEHLAQ KLESMDISAF SKKRRLPQVD SSQPVQENMS VDNHSSSRVE  240
FGNICNQDFS NKLRLELSPA VSDINVVSCS TQSSNEDGGS PHRRISECWS REVQLRTGGV  300
IYTPEAIELS DTGTSFTLKV DSSLPLAATN VESSRLHSLP QSLISNEEVD GHISCQLNLS  360
LASCLSQVDK NQHSSRMAQV GQEMSKHSES QSDANGKNPP NDDKSLPLSH DATGNKQGAA  420
ATPVRVNDVF WEQFLTERPG CSDNEEASSS FKGNSYCEQD DRKSIQGVAS NTRKVEHLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D6e-231111119129Heat shock factor protein 1
5d5v_B6e-231111119129Heat shock factor protein 1
5d5u_B6e-231111119129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783144.10.0PREDICTED: heat stress transcription factor A-5
RefseqXP_016475994.10.0PREDICTED: heat stress transcription factor A-5-like
SwissprotQ94BZ51e-166HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLM1A0B90.0M1A0B9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000118710.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94612125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-168HSF family protein